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Vaccines

Key points: 

  • Vaccines help prevent infections and/or make them less severe. 
  • Non-living (nonviable) vaccinations are safe and well-tolerated in most people with primary immunodeficiency (PI). 
  • Live, attenuated vaccines are safe for many people with PI, but not all. Live vaccines can cause the disease they are meant to prevent in people with very low T cells.
  • The risks and benefits of each vaccine are different for each type of PI, so always discuss vaccinations with your immunologist prior to getting a vaccine.

One of the biggest improvements in human health over the last two centuries has come from widespread use of vaccines [1]. Because of vaccines, serious diseases like polio, smallpox, measles, mumps, and rubella are not common anymore.

Many people with primary immunodeficiency (PI), especially those with antibody deficiencies, have questions about vaccines. For everyone, but especially people with PI, vaccines are an important way to protect against infections. Most people with PI can respond to vaccines [2]. These shots help protect you from infections that could be especially dangerous in someone with a weakened immune system. However, you should always discuss the risks and benefits of any vaccine with your immunologist, who knows your PI and health history best.

How vaccines work

Vaccines imitate an infection by presenting your immune system with a specific germ (or part of a germ) in a controlled way so that your adaptive immune responses, like T cells and B cells, can develop memory of that germ. The memory developed from a vaccine helps your immune system quickly recognize and fight the germ the next time you encounter it. Vaccines prevent a natural infection or make it less severe, depending on the germ and vaccine in question.

The more people who get vaccinated against a germ, the less chance it has to spread, protecting everyone in the community—even those who cannot be vaccinated or may not respond to vaccines. This protection is called herd or community immunity.

Types of vaccines

There are two main types of vaccines: those that use dead germs or parts of germs, and those that use live but weakened germs.

Nonviable vaccines are made with either parts of a germ or killed, whole germs. They are not living, so they can't multiply or cause infection, even in a person whose immune system doesn’t work well. Examples include [3]: 

  • Tetanus and diphtheria vaccines, which contain neutralized toxin from the bacteria that cause tetanus or diphtheria, respectively.
  • Injectable influenza vaccines (not the nasal spray), which are inactivated vaccines that contain whole, killed virus.
  • Haemophilus influenzae type b (Hib) vaccine, which is a subunit vaccine that contains part of the H. influenzae bacteria.
  • Streptococcus pneumoniae polysaccharide vaccine, which contains part of the S. pneumoniae bacteria’s sugar coating. 
  • COVID-19 vaccines, which are either mRNA vaccines that contain the instructions for part of the SARS-CoV-2 virus, or subunit vaccines that contain a key protein from the SARS-CoV-2 virus.

Live, attenuated vaccines contain weakened, live germs that usually don't make people with working immune systems sick. However, people with certain types of PI are at risk of serious illness from these weakened germs. Examples of live, attenuated vaccines include some vaccines given in the U.S. (bolded), as well as vaccines that are not common in the U.S.: 

  • Measles, mumps, and rubella (MMR). 
  • Varicella (chicken pox). 
  • Rotavirus. 
  • Live influenza nasal spray.
  • Live, oral polio (OPV). 
  • Yellow fever. 
  • Live, oral typhoid fever.
  • Bacille Calmette-Guérin (BCG; protects against tuberculosis).

It's important to know that the oral polio and BCG vaccines in particular are not safe for many people with PI. Neither of these vaccines are common in the U.S., but they may be required for travel to other countries.

Vaccines versus monoclonal antibodies

Monoclonal antibodies (mAbs) are another type of medicine that can be used to prevent infections. mAbs are laboratory-created IgG antibodies that target a single threat, like a specific germ. They are typically given as intravenous (IV) infusions and have been used for decades to treat many different diseases [4]. 

Unlike vaccines, mAbs are a form of passive immunization. They provide the recipient with protective antibodies to directly neutralize a germ, similar to immunoglobulin (Ig) replacement therapy. Because they do not rely on a person’s immune response, they can provide protection for people who do not respond well to vaccines, such as some people with PI. They are safe, even for people with severe forms of PI like severe combined immune deficiency (SCID).

In 2023, the U.S. Food and Drug Administration (FDA) approved a mAb called nirsevimab (trade name Beyfortus) to prevent respiratory syncytial virus (RSV) in babies (and in toddlers at risk for severe RSV infections) [5]. In addition, the FDA issued emergency use authorization for pemivibart (trade name Pemgarda) for pre-exposure protection against COVID-19 in people aged 12 or older who are moderately to severely immunocompromised [6]. Other mAb products may become available to prevent other types of infections and mAbs could become an important prevention tool for people with PI. Not every person with PI will qualify for mAbs, and it’s best to discuss these products with your clinical immunologist when they become available. 

Vaccine recommendations for people with PI

People with some types of PI can make enough of an immune response to vaccines to protect themselves against infection. Since people with PI have an increased risk for infections, healthcare providers generally recommend vaccination when there are no safety concerns. People with specific health conditions, like complement deficiencies or those with no spleen (asplenia), may even need more vaccines than recommended for the general public [7], [8]. However, some people with PI are not able to develop protection from vaccines. In certain cases, the vaccine itself might be dangerous for them.

Note that there are autoinflammatory and primary immune regulatory disorders (PIRDs) within several of the categories listed below that have unique concerns related to vaccines. These include:

People with autoinflammatory disorders or PIRDs may be concerned about flares after getting a vaccine. However, in most cases, immunologists highly recommend vaccination for these people because a natural infection will trigger much more severe inflammation. Also, if someone is on targeted treatment, like colchicine or IL-1 inhibitors (such as anakinra or canakinumab), flares in general are reduced.

One exception is the polysaccharide pneumococcal vaccine in people with cryopyrin-associated periodic syndromes (CAPS). Experts recommend considering vaccination with pneumococcal conjugate vaccine instead [9]. Also, people with severe mevalonate kinase deficiency (MKD) have a higher risk of flares after getting vaccines [10].

Since different types of PI affect different parts of the immune system, you should always discuss whether or not to get a particular vaccine with your clinical immunologist. Even so, there are general guidelines about which vaccines are safe and may be helpful for people with PI. For these guidelines, PI conditions are divided into five main groups.

People with significant T cell deficiencies, such as severe combined immunodeficiency (SCID) or congenital athymia, should not get any vaccines until they have been treated with hematopoietic stem cell transplantation (HSCT), gene therapy, or thymus implantation and have been cleared to receive vaccines. It is particularly important that they do not receive any live, attenuated vaccines. Live vaccines could actually cause the disease they are supposed to prevent in people with very low T cells. Newborn babies are at the greatest risk because live, attenuated vaccines like rotavirus and BCG (outside the U.S.) are given within the first few weeks after birth.

People with mild or partial T cell deficiencies, such as DOCK8 deficiency or Down syndrome, should get all nonviable vaccines. However, they may not develop enough protection from nonviable vaccines to be fully protected. Depending on how low a person’s T cells are, the person may also be able to receive some live, attenuated vaccines, like the chickenpox and measles-mumps-rubella (MMR) vaccines. Caregivers and primary care providers should discuss with an immunologist whether it is safe to give live, attenuated vaccines to a person with mild T cell deficiency prior to giving the vaccine(s).

Children and adults with significant antibody deficiencies, such as X-linked agammaglobulinemia (XLA) or common variable immune deficiency (CVID), generally cannot make antibodies in response to vaccines. It is safe to give people with significant antibody deficiencies nonviable vaccines, but these vaccines may not be helpful. For this reason, some immunologists do not recommend routine vaccination for people with significant antibody deficiencies, as long as they are on immunoglobulin (Ig) replacement therapy. Ig replacement therapy provides protective antibodies from other people against vaccine-preventable diseases, such as chickenpox and tetanus. It should also be noted that the antibodies in Ig replacement therapy can reduce the effectiveness of live vaccines.

However, Ig therapy does not provide enough protection against some infections, like COVID-19, influenza, and whooping cough (pertussis). Because the COVID-19 and influenza viruses change rapidly, the donated plasma used to make Ig may not have enough antibodies to the most current version of the viruses to protect people on Ig replacement therapy. This is because it takes time to collect plasma and produce a batch of Ig. That's why many immunologists recommend that people receiving Ig replacement therapy get seasonal nonviable vaccines each year.

In addition, people with significant antibody deficiencies may get some benefit from nonviable vaccines that stimulate T cell immunity, such as inactive influenza [11], even if they do not make antibodies [12].

Since most people with significant antibody deficiencies are on Ig replacement therapy, and live attenuated vaccines are not given to people receiving Ig therapy, the majority of people with significant antibody deficiencies do not receive live, attenuated vaccines.

For milder antibody deficiencies, such as selective IgA deficiency or specific antibody deficiency (SAD), all vaccines can usually be given safely, although some may be less effective. Children and adults who struggle to produce antibodies to polysaccharide vaccines (e.g., Pneumovax 23), like those with SAD, should receive the matching protein-conjugated vaccines (e.g., Prevnar 21) if they are available. Most patients with mild antibody deficiency can safely receive all live, attenuated vaccines. 

The third group includes people with disorders affecting their phagocytes, which are white blood cells that eat and destroy germs. Examples include CGD and leukocyte adhesion deficiency (LAD).

People with these conditions can safely receive nonviable vaccines. However, they should not receive vaccines that contain live bacteria, such as the BCG vaccine (not usually given in the U.S.). Whether or not to get vaccines with live viruses depends on the specific disorder. For example, people with CGD should get live virus vaccines, but some of these vaccines might not be safe for people with LAD.

The fourth category includes people with complement deficiencies. They should receive nonviable vaccines and may need boosters more often than usual (every 3-5 years) [8], [13], [14]. Most live vaccines can be given safely to people with complement deficiencies [13].

The last group includes people with other innate immune disorders, such as interferon gamma disorders and natural killer (NK) cell deficiency. These people can safely receive nonviable vaccines, but they may not work well in some cases. The safety and effectiveness of live, attenuated vaccines depends on the specific PI and must be considered for each person individually.

Vaccine recommendations for close contacts of people with PI

Making sure that close contacts of people with PI are fully vaccinated helps protect them by lowering the chances that they are exposed to germs from the community that could make them very sick. Even if people with PI don't get direct protection from getting vaccines themselves, they benefit from being surrounded by people who are vaccinated and are therefore less likely to get them sick. This protection is called herd or community immunity.

It is very important that all people who are in close contact with individuals who have PI, including household members, family, and caregivers, get all of their vaccines on time and keep their vaccinations up to date. They should receive all vaccines, especially the yearly flu shot, following recommended schedules [15], [4].

Because some live virus is shed in body fluids and stool for up to two weeks following live viral vaccination, it might be necessary to limit contact between anyone recently immunized with live virus vaccines and a high-risk person with very low T cells, like a newborn with SCID or athymia. For people receiving Ig replacement therapy, the infused antibodies provide protection against any shed virus. If a close contact to a person with PI shows signs of an infection after being vaccinated, like a rash after getting the chickenpox vaccine, the person with PI might need to stay away from them for a while and see their healthcare provider for a special shot called zoster immunoglobulin. 

  1. A Brief History of Vaccination. In: World Health Organization [Internet]. [cited 1 Oct 2025]. Available: https://www.who.int/news-room/spotlight/history-of-vaccination/a-brief-history-of-vaccination
  2. Sobh A, Bonilla FA. Vaccination in primary immunodeficiency disorders. J Allergy Clin Immunol Pract. 2016;4: 1066–1075. Available: https://pubmed.ncbi.nlm.nih.gov/27836056/
  3. Vaccine Types. In: Department of Health and Human Services [Internet]. US Department of Health and Human Services; 26 Apr 2021 [cited 23 Oct 2025]. Available: https://www.hhs.gov/immunization/basics/types/index.html
  4. Monoclonal Antibodies. In: National Cancer Institute [Internet]. 24 Sep 2019 [cited 23 Oct 2025]. Available: https://www.cancer.gov/about-cancer/treatment/types/immunotherapy/monoclonal-antibodies
  5. FDA Approves New Drug to Prevent RSV in Babies and Toddlers. In: Food and Drug Administration [Internet]. FDA; 9 Aug 2024 [cited 23 Oct 2025]. Available: https://www.fda.gov/news-events/press-announcements/fda-approves-new-drug-prevent-rsv-babies-and-toddlers
  6. Emergency Use Authorizations for Drugs and Non-Vaccine Biological Products. In: Food and Drug Administration [Internet]. FDA; 18 Sep 2025 [cited 23 Oct 2025]. Available: https://www.fda.gov/drugs/emergency-preparedness-drugs/emergency-use-authorizations-drugs-and-non-vaccine-biological-products
  7. Bonanni P, Grazzini M, Niccolai G, Paolini D, Varone O, Bartoloni A, et al. Recommended vaccinations for asplenic and hyposplenic adult patients. Hum Vaccin Immunother. 2017;13: 359–368. Available: https://pubmed.ncbi.nlm.nih.gov/27929751/ 
  8. Morgan BP, Orren A. Vaccination against meningococcus in complement-deficient individuals. Clin Exp Immunol. 1998;114: 327–329. Available: https://pmc.ncbi.nlm.nih.gov/articles/PMC1905138/ 
  9. Jaeger VK, Hoffman HM, van der Poll T, Tilson H, Seibert J, Speziale A, et al. Safety of vaccinations in patients with cryopyrin-associated periodic syndromes: a prospective registry based study. Rheumatology (Oxford). 2017;56: 1484–1491. Available: https://pubmed.ncbi.nlm.nih.gov/28482054/ 
  10. Massaro MG, Caldarelli M, Franza L, Candelli M, Gasbarrini A, Gambassi G, et al. Current evidence on vaccinations in pediatric and adult patients with systemic autoinflammatory diseases. Vaccines (Basel). 2023;11: 151. Available: https://pubmed.ncbi.nlm.nih.gov/36679996/ 
  11. Liu Y, Wu Y, Lam K-T, Lee PP-W, Tu W, Lau Y-L. Dendritic and T cell response to influenza is normal in the patients with X-linked agammaglobulinemia. J Clin Immunol. 2012;32: 421–429. Available: https://pubmed.ncbi.nlm.nih.gov/22289994/ 
  12. Plebani A, Fischer MB, Meini A, Duse M, Thon V, Eibl MM. T cell activity and cytokine production in X-linked agammaglobulinemia: implications for vaccination strategies. Int Arch Allergy Immunol. 1997;114: 90–93. Available: https://pubmed.ncbi.nlm.nih.gov/9303337/ 
  13. Medical Advisory Committee of the Immune Deficiency Foundation, Shearer WT, Fleisher TA, Buckley RH, Ballas Z, Ballow M, et al. Recommendations for live viral and bacterial vaccines in immunodeficient patients and their close contacts. J Allergy Clin Immunol. 2014;133: 961–966. Available: https://pubmed.ncbi.nlm.nih.gov/24582311/ 
  14. Skattum L, van Deuren M, van der Poll T, Truedsson L. Complement deficiency states and associated infections. Mol Immunol. 2011;48: 1643–1655. Available: https://pubmed.ncbi.nlm.nih.gov/21624663/ 
  15. AAP Immunization Schedule. In: American Academy of Pediatrics [Internet]. 17 Sep 2025 [cited 23 Oct 2025]. Available: https://publications.aap.org/redbook/resources/15585/AAP-Immunization-Schedule
     

This page contains general medical and/or legal information that cannot be applied safely to any individual case. Medical and/or legal knowledge and practice can change rapidly. Therefore, this page should not be used as a substitute for professional medical and/or legal advice. Additionally, links to other resources and websites are shared for informational purposes only and should not be considered an endorsement by the Immune Deficiency Foundation.

Adapted from the IDF Patient & Family Handbook for Primary Immunodeficiency Diseases, Sixth Edition 
Copyright ©2019 by Immune Deficiency Foundation, USA