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Hematopoietic stem cell transplantation

Key points:

  • Hematopoietic stem cell transplantation (HSCT) can be a long-term treatment for multiple PIs, but has significant side effects and risks, including death, that people with PI, their loved ones, and their healthcare providers must discuss in detail before moving forward. 
  • Finding an appropriate donor is very important and can be the limiting step; however, modern technologies allow transplant doctors to find donors for almost all patients.
  • Depending on the specific PI and the type of donor, the transplant process may include conditioning, which is a mix of chemotherapy and/or radiation designed to make room for the donor’s cells and prevent the recipient’s body from rejecting them. 
  • Choosing a transplant center is an important but personal decision and discussing options with an expert on the specific PI being treated may be helpful. 
  • HSCT cannot 'fix' problems outside of the blood or immune system and people who have had a successful HSCT can still pass PI-causing gene variants on to their children. 

Some types of PI can be treated with medication, such as immunoglobulin (Ig) replacement therapy. However, others are life-threatening or can severely affect a person’s quality of life. When PI is likely to cause significant harm or death or is not responding well to standard treatment, an allogeneic hematopoietic stem cell transplant (HSCT), more commonly known as a bone marrow transplant (BMT), may be a treatment option.

HSCT is the standard of care for conditions with an extremely high risk of death like severe combined immunodeficiency (SCID) or familial hemophagocytic lymphohistiocytosis (HLH). Healthcare providers also consider HSCT on a case-by-case basis for many conditions that are severe in a subset of patients, such as chronic granulomatous disease (CGD), Wiskott-Aldrich syndrome (WAS), or CD40 ligand deficiency. As researchers continue to identify new genetic variants that cause PI, HSCT may be considered for many other conditions if a person is not doing well on standard treatments.

Because HSCT has significant risks, including death, people with PI, their loved ones, and their healthcare providers need to discuss the procedure in depth and agree that it is the best path forward. For some people, this process will involve close monitoring over time. The timing of HSCT is important, because it has to be started before the person develops severe complications that increase the risks or even rule out HSCT as an option.

Because infections at the time of transplant can affect its success and the person undergoing transplant will have no immune system until the donor cells begin to grow, it is very important to protect them from germs throughout the HSCT process. Healthcare providers may recommend that the person limit contact to only caregivers and use other isolation procedures.

How hematopoietic stem cell transplantation works

Hematopoietic stem cells in bone marrow makes all of a person's blood cells.
Hematopoietic stem cells (HSCs) in your bone marrow make red blood cells, platelets, and white blood cells like neutrophils, NK cells, T cells, and B cells.

Special cells in our bone marrow called hematopoietic stem cells make all of a person’s blood cells, including red blood cells, platelet-producing cells, and white blood cells such as neutrophils, T cells, B cells, and natural killer (NK) cells. In most conditions considered for HSCT, one or more of these cells are not there or do not work well.

During HSCT, transplant doctors transfer hematopoietic stem cells from one person to another. The person who receives the stem cells is called the HSCT recipient. The term ‘allogeneic’ means that the stem cells given to the recipient came from someone else, the hematopoietic stem cell donor. If an allogeneic HSCT is successful, the donor's hematopoietic stem cells replace the recipient's own stem cells. The recipient then produces all of the types of blood cells from the donor cells, including the part of the immune system they were previously missing or that was not working properly. The result is a “cure” of the underlying PI.

During HSCT, the recipient gets hematopoietic stem cells from the donor.
Hematopoietic stem cell transplantation provides stem cells from the donor to the recipient.

Allogeneic HSCT fixes any problems specific to the types of cells created by the new hematopoietic stem cells. For example, platelets as well as white blood cells are fixed in people with WAS who have a successful allogeneic HSCT. However, problems outside of the blood or immune system may not be corrected by HSCT. For instance, a person with cartilage-hair hypoplasia will still have short stature after transplant, because HSCT does not replace or correct muscle or bone cells. In addition, sperm and egg cells are also not corrected, so a person who has had a successful HSCT can still pass PI-causing variants on to their children. Finally, HSCT cannot reverse or repair damage already caused by PI, such as lung damage from severe infections.

Hematopoietic stem cells can be collected from the bone marrow, the peripheral blood, or umbilical cord blood, so HSCT procedures may be called bone marrow transplants (BMT), peripheral blood stem cell transplants (PBSC), or cord blood transplants (CBT) depending on the source of donor cells. The transplant itself does not require surgery for the recipient. The hematopoietic stem cells are typically infused into a large vein in the same way that someone receives a blood transfusion. The donor’s cells are also known as a graft.

Find hematopoietic stem cell transplant clinical trials

See if you are eligible for clinical trials evaluating new approaches and protocols for treating PI with a hematopoietic stem cell transplant (HSCT).

Finding a stem cell donor

The first step in HSCT is finding a donor. Finding a donor can take several weeks or months. Donors can be family members or people who are not related to the recipient. Unrelated donors are usually found through bone marrow registries or umbilical cord blood banks.

In order to find the best donor, healthcare providers test the recipient's and donor’s human leukocyte antigen (HLA) proteins. The immune system uses HLA proteins as tags to determine which cells belong to the person’s body and which don't, and should be destroyed. An ideal donor matches all or most of the HLA proteins of the HSCT recipient so that the recipient's immune system will accept the donor's cells without destroying them.

Everyone has two sets of HLA genes that determine their HLA proteins. One set is passed down by a person's mother, and the other set is passed down by a person's father. Transplant doctors typically look at 8-12 HLA genes through a blood test when trying to find a donor. A fully matched donor would be an 8/8, 10/10, or 12/12 (depending on the testing lab) HLA-matched donor.

HLA-matched donors are the best donors because when HLA proteins are the same between a donor and recipient, the chances of transplant complications, such as graft rejection and graft-versus-host disease (GVHD), are lower. Thankfully, newer methods have increased the ability to do transplants with less matched donors, so doctors can still consider transplant even with significant HLA mismatches between the donor and recipient.

Types of donors

The best stem cell donor for someone with PI is an HLA-matched sibling. The sibling must have the same mother and father as the recipient. Each full biological sibling of the recipient has a 25% chance of being a perfect match, so even recipients with many siblings may need to look elsewhere for a donor. Note that it is important that potential sibling donors are tested for PI before being used as donors.

If there are no sibling donors available, the search for stem cells will move to HLA- matched, unrelated donors. These are individuals who volunteer to provide their stem cells and have no family connection to the HSCT recipient.

People who are willing to donate their stem cells are placed on an anonymous list called a registry. There are several registries worldwide, and most of them cooperate with each other. Healthcare providers look through registries for donors that match the recipient's HLA types. If the donor stem cells match the recipient's HLA types, then those cells can be requested for transplant.

Another source of stem cells is umbilical cord blood. Umbilical cord blood is sometimes donated by a mother after she has a child. The blood comes from the umbilical cord of her child and contains hematopoietic stem cells. The blood is frozen and kept in cord blood banks. The cord blood, which typically comes from an unrelated individual, could be a match for an HSCT recipient.

Because HLA genes are inherited, recipients are most likely to find HLA-matched, unrelated donors among people from a similar ethnic background. Unfortunately, because of a lack of representation in registries and cord blood banks, this means some ethnic groups and those of multi-ethnic heritage may have more difficulty finding an HLA-matched, unrelated donor.

If there are no matched donors, a mismatched donor may be considered. If only one HLA type is different between the person with PI and the donor, that would be noted as a 7/8, 9/10, or 11/12 HLA match. However, having an HLA mismatch increases the risks of graft rejection and GVHD, and this must be considered when thinking about how the transplant doctor does the transplant.

When a sibling or unrelated HLA-matched donor cannot be found, then another option for stem cells is a haploidentical family match. Haploidentical means "half-matched." These donors are usually a parent of the recipient but can be a sibling or even an aunt, uncle, or cousin related by blood.

This type of transplant must be done in a special way because there is a higher risk of graft rejection or acute GVHD. Donor T cells must be removed from the graft or otherwise destroyed to decrease the risk of severe GVHD.

Donating hematopoietic stem cells

Hematopoietic stem cells can come from three sources: bone marrow, peripheral blood, or umbilical cord blood donations.

Cord blood donations are collected from the umbilical cord at the time of a baby’s birth and processed in a special way to allow the cord blood to be frozen and stored until it is used.

HSCT is sometimes called bone marrow transplant because doctors can get hematopoietic stem cells directly from the marrow of the donor’s bones. During bone marrow donation, the donor goes under general anesthesia. Doctors then insert long needles into the donor’s hip multiple times to get bone marrow cells. The bone marrow cells, which contain a lot of hematopoietic stem cells, are then put into a sterile bag, processed, and then given to the HSCT recipient.

Another way to get hematopoietic stem cells from a donor is by collecting blood straight from a vein through an intravenous, or IV, line. This process is called peripheral blood stem cell donation.

The donor begins the process by receiving, over several days, injections of a medication that causes their hematopoietic stem cells to leave the bone marrow and enter their bloodstream. After the injections, the donor’s blood is collected through an IV in an hours-long process. The blood passes through an apheresis machine (similar to a platelet or plasma donation machine) that removes stem cells. The machine returns the rest of the donor’s blood through an IV in the donor’s other arm. The stem cells are stored in a sterile bag until the recipient receives them. Sometimes, the donor has to go through more than one peripheral blood stem cell collection in order to collect enough stem cells.

Become a stem cell donor

Interested in becoming a stem cell donor? The National Marrow Donor Program (NMDP), formerly Be The Match, runs a U.S. stem cell registry that helps people who need HSCT find an appropriate donor. See if you qualify!

Preparing for allogeneic HSCT

Choosing a transplant center

You may or may not have options when it comes to choosing a transplant center. Sometimes health insurance providers require people to use certain specialists or certain facilities. Two resources for finding transplant specialists include the Primary Immune Deficiency Treatment Consortium (PIDTC) [1] and The National Marrow Donor Program [2]. Organizations that help advocate for specific conditions may also be a good resource.

Some people may be fortunate enough to have a transplant center near home, but many will have to travel to specialized centers for HSCT. This can be emotionally and financially challenging for families and caregivers. The time spent at a transplant center varies from center to center and from person to person. However, recipients and caregivers can generally expect to stay at or near the transplant center for at least 3-6 months before returning home. Allogeneic HSCTs are generally performed in a hospital, but once recipients are healthy enough, they are discharged. Even then, they have to return to the transplant clinic several times a week as they recover.

Individuals with PI and their families or caregivers usually meet members of the transplant team, which can include physicians, nurse practitioners, social workers, psychologists, nurses, and financial counselors. These team members help prepare recipients and their families for the impact the transplant will have on daily life, and they provide support and assistance with all aspects of the transplant.

Here is a list of questions to ask a transplant team before choosing them to perform the HSCT.

  • How many cases of the specific PI has the hospital treated with HSCT? How are the patients doing/what are the outcomes?
  • How many years has the hospital used HSCT to treat that PI?
  • How many HSCT doctors are on staff?
  • How much conditioning will be required before the HSCT?
  • Which doctor or group of doctors will be in charge of the recipient’s care after discharge?

Individuals with PI and their families or caregivers should learn as much as they can about the HSCT procedure beforehand. The following questions can be used to both educate caregivers and evaluate the transplant center’s experience.

  • What precautions should be taken prior to admission for transplant?
  • How long will the recipient be in isolation?
  • What isolation precautions are required before, during, and after transplant?
  • What are the responsibilities of caregivers to keep isolation precautions in place?
  • What are the isolation guidelines and expectations of members of the medical team and visitors when entering the recipient’s hospital room?
  • Describe the complications related to HSCT for a person with this specific PI.
  • If things go well during transplant, what is the average amount of time in the hospital and the average recovery time?
  • What is expected of a caregiver while the recipient is in the hospital and after the recipient goes home?
  • When can the recipient receive vaccines (live and nonviable) after the HSCT?

Staff at the hospital, working with the family or caregivers, will often work with insurance companies to get approval for the transplant.

Pre-transplant tests and procedures

HSCT recipients have a large number of tests and procedures done before transplant to make sure they are healthy enough to have a transplant. Healthcare providers may find hidden problems that need to be addressed prior to transplant, such as infections or organ function problems.

Immunologists and transplant providers typically order many blood tests, as well as imaging tests, such as computerized tomography (CT) scans, ultrasounds, and/or magnetic resonance imaging (MRI). Special tests of kidney function are also done. The heart is evaluated with an echocardiogram (ECG, EKG), which is an ultrasound of the heart. If recipients are old enough, pulmonary function testing will be done. Some may need procedures such as a bone marrow biopsy, lumbar puncture (also known as a spinal tap), bronchoalveolar lavage, or gastrointestinal endoscopy prior to allogeneic HSCT. All of these tests usually take a few weeks to complete.

Recipients and their families or caregivers may also meet with a fertility specialist, as chemotherapy used in conditioning can sometimes decrease the ability to have children in the future. These options will be different depending on the patient’s sex, age, and pubertal status, as well as the transplant center. For patients that have already undergone puberty, semen collection or egg harvesting is typically recommended. Of note, egg harvesting requires hormone stimulation and may take weeks and/or multiple attempts to be successful. It is possible a patient’s clinical status would not allow time for such a procedure to happen. For pre-pubertal patients, ovarian or testicular tissue cryopreservation, or long-term freezing, may be available. Though both of these are currently experimental, they offer the potential for future fertility.

Consent for transplant

Before having a transplant, a recipient and/or caregiver must give consent to proceed with the transplant. Members of the transplant team will meet with the recipient and/or caregiver to go over the process and the risks and benefits in detail, including the medications that will be used and their possible side effects. Recipients and caregivers should ask questions and be sure that they understand the proposed treatment before giving consent.

Hospital stay and the transplant

HSCT is different from organ transplants (e.g., liver, lung, or kidney) in several ways. The transplant itself is not a surgery, because the stem cells are given in a vein similar to a blood transfusion. Also, HSCT recipients need special preparation to receive the stem cells that solid organ patients don’t need. The process of replacing the stem cells in the bone marrow requires a hospital stay of about 6-8 weeks. This inpatient stay is what most people think of as 'the transplant.'

After discharge, full recovery of the immune system occurs as an outpatient and is a process that takes many months, up to a year. Unlike solid organ transplant recipients, HSCT recipients do not need lifetime immunosuppressive medications if all goes well because the new immune system becomes accustomed or tolerant to the recipient’s body.

Central line

If the HSCT recipient is healthy enough to proceed with the transplant, they will receive an IV line in a large vein in the chest or neck. This line is called a central line and will be in place for several months. The recipient will go under general anesthesia in order for the central line to be put in.

The central line helps doctors take blood from the recipient to monitor the progress of the new immune system. Doctors also use the line throughout the transplant process to give the recipient chemotherapy, the donor cell infusion, antibiotic, antiviral, and antifungal medications to prevent infections, and IV fluids. It avoids the need for repeated IV placement and multiple needle pokes. The recipient or a caregiver will need to learn to take care of the central line prior to leaving the hospital.

Conditioning

What happens during conditioning is similar to what happens before replanting a garden. If the HSCT recipient's immune system is a garden filled with weeds, the weeds need to be cleared out before healthy plants can grow. For HSCT, the conditioning regimen acts as weed killer. It is a combination of medications, and sometimes radiation, that destroy the recipient's own immune and stem cells to prepare for receiving the donor stem cells.

The goal of conditioning is to increase the chances of complete replacement of the recipient's immune system with donor cells and to reduce the chance of HSCT complications. On the other hand, conditioning comes with side effects and the potential for serious risks of its own. Together, the recipient, their family or caregivers, and their doctors should review the options available and decide on both the need and intensity of conditioning based on the balance of benefits and risks.

In general, conditioning may be recommended when the recipient has some immune function or when the stem cell donor is not related to the recipient. Omitting conditioning may be an option when treating certain types of SCID, particularly if there is a matched sibling donor or if significant infections are present. However, when conditioning is not used, the chances of the recipient achieving a fully functioning immune system are generally lower. The recipient may need additional treatment, have more infections post-transplant, or even need another HSCT later in life.

Healthcare providers may strongly recommend that conditioning be used or not used based on their best clinical judgment and current guidelines, the recipient’s specific situation, and sometimes the hospital’s standard practice. If conditioning is recommended, questions to ask include:

  • What side effects may be most problematic?
  • What are the risks of the specific conditioning regimen?
  • Long term, do the potential benefits of conditioning outweigh the potential risks?
  • For the recipient, is conditioning the best choice?

If healthcare providers don’t recommend conditioning, questions to ask include:

  • How likely is it that HSCT will lead to a fully functioning immune system?
  • What are the chances that the recipient will need another transplant later in life or lifelong immunoglobulin (Ig) replacement therapy?
  • How likely is it that the recipient’s body will reject the transplant?

There are two major categories of conditioning medications; those that target stem cells in the bone marrow and those that target immune cells throughout the body. They have different goals. HSCT recipients may have one or both types of conditioning before treatment. Because these medications destroy cells, they are called chemotherapy, even when they are used in people that do not have cancer.

Conditioning targeting stem cells uses chemotherapy drugs to reduce the number of stem cells in the recipient's bone marrow (myelosuppression). The goal is to make space in the recipient's bone marrow for the donor stem cells. There are several intensities of myelosuppressive conditioning. They use the same drugs, such as busulfan or melphalan, but vary in the dose and number of drugs used. The three categories of myelosuppressive conditioning include:

  • Myeloablative conditioning (MAC): This type of conditioning uses a higher dose of chemotherapy to completely get rid of the recipient’s stem cells. Successful MAC makes plenty of empty space in the recipient's bone marrow for new stem cells to land and grow. In general, MAC has the best chance to fully replace the recipient’s stem cells with donor stem cells to achieve a fully functioning immune system that can fight off infections. However, this approach does not always work in every patient and comes with the risk of more drug toxicity.
  • Reduced-intensity conditioning (RIC): This type of conditioning uses lower doses of chemotherapy to achieve full replacement of the recipient's stem cells but with less toxicity. Successful RIC makes enough empty space for donor stem cells to land and grow. Use of RIC means less severe side effects and lower risk. But because RIC uses lower doses, there is a greater chance that replacement of the recipient's stem cells will be incomplete when compared with MAC. This means a higher risk that some of the recipient’s stem cells might remain post-transplant. For most conditions, this may still be enough to correct the underlying immune disorder.
  • Low-dose conditioning: This type of conditioning uses very low doses of chemotherapy and is more commonly used in gene therapy.

Conditioning targeting immune cells uses medications to reduce the T and B cells in the recipient’s immune system. Doctors call this immunosuppression. The goal is to protect the donor stem cells from being attacked by the recipient’s immune cells. There are two categories of immunosuppressive medications:

  • Antibody-based medications: Antibody-based medications, also called serotherapy, use antibodies to target and destroy the recipient’s immune cells with the goal of decreasing the risk of graft rejection. Examples include alemtuzumab and ATG (anti-thymocyte globulin).
  • Chemotherapy medications: Some chemotherapy medications kill immune cells but not stem cells. Examples include cyclophosphamide and fludarabine.

Conditioning can have short-term side effects and long-term risks. Short-term side effects are temporary and usually go away when the new donor cells start growing. Long-term side effects may appear months or years after conditioning. On rare occasions, short-term side effects become chronic and last a long time.

Short-term side effects can be mild or severe. Some examples include:

  • Inflammation of mucous membranes (mucositis) and nausea, vomiting, diarrhea: Chemotherapy can damage the lining of the mouth, throat, stomach, and intestines. The damage can be very mild or more problematic depending on the conditioning regimen. Recipients may have sores, drooling, nausea, pain, vomiting, diarrhea, and sometimes bleeding. These side effects can be treated with pain medications, anti-nausea medications, and nutrition and fluid support such as a feeding tube. They occur when the body’s defenses are very low, and start to heal once the new cells grow, usually within a few weeks to months after the transplant.
  • Anemia, bleeding, and infection: Conditioning will reduce the number of all of the recipient’s blood cells, including immune cells, red blood cells, and platelets, for several weeks. During this time, the recipient is at an increased risk for infection, may have blood clotting problems, or may feel tired and weak because they have fewer red blood cells. It is likely that transfusion of blood and/or platelets, as well as antibiotics or other methods to minimize the risk of infections during the period of low white cells, will be needed during this time.
  • Harm to vital organs, such as the brain, lungs, kidneys, and liver. These organs are all very closely monitored during the transplant period, particularly if their function was already affected prior to the transplant. Sometimes these complications can be treated with medication.

These long-term complications do not happen frequently, but recipients and their families or caregivers should know that they do sometimes occur [3]:

  • Chronic problems from harm to vital organs, such as the brain, lungs, kidney, and liver. Sometimes these complications can be treated with medication.
  • Reduced bone growth, which may result in shortened height as an adult.
  • Endocrine abnormalities, such as growth hormone deficiency, underactive thyroid (hypothyroidism), and ovarian and testicular dysfunction.
  • Reduced fertility.
  • Increased risk of cancer.
  • Developmental delay or problems with learning.
  • Issues with the development and arrangement of teeth.

Stem cell infusion

The timing of the transplant must be arranged so that the donor cells are ready when the recipient has completed conditioning and is ready to receive them. The planned day of stem cell infusion is called Day 0. The donor’s stem cells may be given as is, or the lab may remove certain parts, such as T cells, prior to infusion. The stem cells are then given through the central IV line like a blood transfusion. Similar to a blood transfusion, the stem cell transplant is a minor procedure that can be as short as 30 minutes or as long as a few hours. General anesthesia is not necessary and caregivers can be present during the procedure.

After Day 0, recipients typically remain in the hospital for several weeks while doctors wait for the new stem cells to grow. In the garden analogy, once the weeds are gone and the seeds are planted, there is a period of time when the garden is empty because it takes time for the healthy plants to grow. During this time, there are no blood cells being produced by the recipient’s bone marrow, so it is common for the recipient to need blood and/or platelet transfusions.

Healthcare providers watch recipients closely for any signs of infection, and recipients may need pain medicines, medicines for nausea, and fluid and nutrition support. Frequent blood tests are performed to monitor for any signs of organ damage. Most recipients also receive medications that suppress the immune system in order to help prevent graft-versus-host disease (GVHD, explained below). Common examples include cyclosporine or tacrolimus.

Engraftment

After infusing the donor’s stem cells, doctors expect engraftment to occur. Engraftment is when the donor's hematopoietic stem cells grow in the recipient and start making healthy blood cells. Transplant teams monitor the recipient with a blood test called a complete blood count (CBC). When the stem cells start to work, the numbers of blood cells will start to rise. Typically, the first measure to rise is the absolute neutrophil count, or ANC. The time it takes for different cell types to recover to a safe level varies. Until healthcare providers are sure that there is good engraftment, the recipient will be monitored very closely. Sometimes, doctors give the recipient medication to specifically jumpstart white blood cell production.

Once there are signs of engraftment, a special blood test will be done to determine what percentage of blood cells are from the donor, called an engraftment or chimerism study. Chimerism refers to having cells in the body with different genes, in this case, hematopoietic stem cells and blood cells with the donor's genes and all other cells with the recipient’s genes. The higher the percentage of blood cells with the donor’s genes, the better the HSCT has worked.

Once the recipient’s blood cell counts reach a safe level, they may be able to transition to outpatient care at the transplant center. Recipients will have a lot of oral medications, and many need some IV medications, IV fluids, or IV nutrition during the early outpatient treatment phase. Home healthcare services, depending on insurance coverage, may help with these needs.

Early transplant complications

Allogeneic HSCT can have many complications, and it is difficult to estimate the risks for a specific individual.

The donor stem cells may not grow in the recipient’s bone marrow and produce all the different types of immune cells. If donor stem cells don’t grow (primary graft failure) or don't last (secondary graft failure), a recipient is said to have graft failure. The recipient will often have a second transplant if this occurs. More conditioning is typically required in this scenario.

Sometimes graft failure occurs because a recipient’s immune system, even if it doesn't work very well, attacks the donor’s stem cells. This is called graft rejection. The recipient will often have a second transplant if this occurs. More conditioning may be needed during the second transplant depending on the underlying reason for the rejection.

The donor stem cells may engraft and start working to make T cells with the help of the thymus, but fail to engraft in the bones, where B cells are made. If this happens, the recipient may still need lifelong Ig replacement therapy, antimicrobial medications, or other ongoing therapy to help the immune system. This typically only occurs in the setting of low or non-conditioned transplants.

If a donor's stem cells grow, but the recipient's stem cells also grow after transplant, the recipient has mixed chimerism, which will show up in the engraftment study. Mixed chimerism is more likely to happen with lower-intensity conditioning regimens. In general, mixed chimerism is okay for many individuals with many types of PI, as long as there are enough donor cells to keep the recipient healthy. The level and type of donor cells needed depend on the PI for which that individual was treated.
Read 2023 article on mixed chimerism

Recipients usually require blood transfusions early after transplant. After successful engraftment, the recipient changes blood type from their own blood type to the blood type of the donor. Once the donor cells are producing a good amount of red blood cells, the recipient will generally no longer need transfusions.

Recipients have low platelet counts and are prone to bleeding after transplant. They often receive platelet transfusions for several weeks to prevent bleeding. After successful engraftment, they generally no longer need transfusions.

In the first few months after transplant, the donor’s immune system may recognize the recipient’s cells as being foreign, and mount an attack against the recipient’s own tissues, just as it would fight an infection. Most HSCT recipients take immunosuppressive medicines for approximately six months after transplant to prevent GVHD. In some types of transplant, the cells that cause GVHD are fully removed prior to the stem cell infusion; these patients may not need to take GVHD prophylactic medications. Sometimes, despite the preventative medications or the removal of cells, GVHD still develops. The most common signs of acute GVHD are rash or diarrhea. It can also affect the liver or other organs. Acute GVHD can be mild or severe. It is usually treated with steroids and other medications that tamp down the immune reaction.

Chronic GVHD typically occurs later than acute GVHD and can last a long time. It can affect several organs including the skin, mouth, gastrointestinal tract, eyes, lungs, and genitourinary tract. It is usually treated with steroids and other medications that tamp down the immune reaction.

Individuals with PI have trouble fighting infections prior to allogeneic HSCT, but the risk goes up even more immediately after transplant. Even when new immune cells appear, this infection risk remains because of how new the cells are, as well as the use of GVHD-preventing medications. Recipients are monitored very closely for infections during and after transplant. Recipients take several antimicrobial medications to prevent infections and may receive Ig replacement therapy regularly. Recipients are treated aggressively for any sign of infection. It is important that the recipient or caregivers call immediately if the recipient has a fever or other signs of infection after discharge from the hospital.

Chemotherapy used in conditioning can damage organs such as the liver and lungs. Certain transplant medications can damage the kidneys. Organ function is another thing that will be closely monitored after transplant.

TMA is when little blood vessels are injured during or after transplant. This can lead to blood clotting in the little blood vessels and organ damage.

Even though transplant outcomes are now very good for most individuals with PI, survival is not 100%. In general, the chances of survival are approximately 80% for most individuals with PI. However, if a matched (HLA) sibling is available as a donor, survival is more than 90%. These chances of survival may be higher or lower depending on several factors such as the specific type of PI, age of the recipient, pre-existing complications such as infection or poor organ function, donor relation, and HLA match, among other things.

Hospital discharge

The recovery process for a recipient after HSCT takes at least several months, and will vary according to conditioning, the type of donor, any complications, and the individual hospital or transplant center’s criteria for discharge. Typically, once a recipient's donor cells are making enough neutrophils and platelets to keep the patient safe, they are ready for discharge. Recipients must not have fevers or bleeding, and they need to be able to take their medications as prescribed. Recipients or caregivers must be comfortable taking care of the central line, and they may also need to learn to give IV fluids, IV nutrition, and even some IV medications.

Once a recipient is discharged, they usually come back to the transplant clinic several times a week for lab work, examinations, and infusions. Often recipients are discharged to housing that is close to the transplant center, particularly if they are far from home. Recipients can still develop complications after discharge, including infections, organ damage from medications, and GVHD.

Once engraftment occurs, and the frequency of blood tests goes down, the central line may be taken out.

By Day +100, some recipients are ready to return to their own homes and can continue to follow up with their local healthcare providers. Recipients often still need to take several medications for the first year after transplant, including medications to prevent GVHD. Until they have a full recovery of immune cell numbers and are successfully weaned off of immunosuppressive medications, recipients should remain isolated at home. Visitors should remain restricted, and the recipient will not be allowed outside, or in public places, for several months. Neutrophils recover a few weeks after transplant, but T cells require many months and B cells may take 1-2 years.

Healthcare providers can do blood tests to see how an individual’s immune system is recovering and make recommendations about when it is safe to stop isolation. Once the immune system is fully recovered, recipients should receive routine re-vaccination following the transplant.

Preparing to return home

Once a recipient’s time in the hospital or in temporary housing comes to an end, their caregivers must consider how to prepare their home for the arrival of the newly transplanted individual.

The recipient must stay at home, other than traveling to medical appointments, and should not go out into public places until healthcare providers give permission. The recipient is still very vulnerable to infection, and germs must be controlled as much as possible.

Household members should follow guidelines for travel, visitors, food preparation, home cleaning, and mold remediation. All households are different and guidance on visitors and cleaning will vary with doctor recommendations and household lifestyle.

Traveling by car

When the recipient rides in the car, keep the vehicle windows up and set the heat or air conditioning to recirculate the inside air instead of pulling in outside air. This is particularly important when driving past construction sites, which can throw fungal spores into the air.

Visitors

Limit visitors to those who live in the house and any regular caretakers of the recipient, such as nurses.

  • No one should enter the home if they have been sick within the prior seven days, as they could still be contagious.
  • No visitors beyond caretakers should be allowed in the home, especially children, as they are often exposed to illness at school, and may be contagious.
  • Any people, including caretakers and household members, who enter the home must wash their hands before touching objects in the home, and hand washing should occur just before touching the recipient.
  • When household members arrive home each day from activities like school, work, or shopping, they should wash their hands and put on fresh clothes.
  • Caretakers, as well as household members, must be careful not to cough or sneeze near the recipient.
  • If household members get sick, they should avoid direct care of the recipient, touching the recipient (unless they've washed their hands immediately), being within six feet (coughing distance) of the recipient, and should wear a mask.

Food preparation

Keep these food-related recommendations in mind.

  • The recipient should only consume jarred foods or foods that have been fully cooked. They should not eat raw vegetables or fruit.
  • Avoid keeping fruits and vegetables on the counter, as they may give rise to fungal spores, even if they do not look spoiled. Refrigerate fruits and vegetables instead.
  • The recipient should not eat honey, products with live cultures, or probiotics.
  • For babies on formula, use ready-to-feed liquid formula if possible. Powdered formula is less safe because it is not sterile. If you must use powdered formula, then prepare the formula with either boiled or bottled water.

Home cleaning

  • Steam clean carpets.
  • Regularly mop all hard surface floors.
  • Consider installing HEPA filters in the HVAC unit, and change them monthly.
  • Consider purchasing a free-standing HEPA air filter unit for the main room where the recipient stays.
  • Keep windows and doors closed to minimize entry of mold or fungus.
  • Routinely clean all touchable items and surfaces, such as faucets, countertops, doorknobs, window blind rods, and light switches.
  • Consult your healthcare provider about pets in the home. If pets remain in the house, they should not come in contact with the recipient.
  • If mold is discovered in walls or carpets before the recipient comes home, have it professionally removed and complete all other cleaning several weeks before the recipient arrives home. If mold is discovered after the recipient is home, it is best not to disturb it. Have the severity of the mold problem evaluated by a professional. Consult with your immunologist. Relocation may be necessary.

Long-term follow-up

By 1-2 years post-transplant, most recipients have good immune system recovery and do not need frequent follow-up. Generally, recipients should return to the transplant center for follow-up yearly or every other year, as this long-term follow-up is important to monitor for late complications of transplant. These late complications are mostly related to the conditioning medications given to prepare the recipient for transplant, but they may also be related to organ damage caused by infection or autoimmunity before the transplant.

The severity and likelihood of late complications related to allogeneic HSCT varies. Possible long-term complications from chemotherapy drugs include harm to vital organs such as the brain, lungs, kidneys, and liver. Sometimes, these complications are reversible with medication.

Other complications include endocrine problems such as thyroid function, growth, or puberty issues, reduced fertility, and increased risk of cancer.

Individuals who develop chronic GVHD need special long-term follow-up. The transplant team can tell recipients and caregivers more about what long-term monitoring may be needed.

  1. Primary Immune Deficiency Treatment Consortium, "Contact Us,. [cited 23 Oct 2025]. Available: https://pidtc.rarediseasesnetwork.org/contact-us.
  2. Global Transplant Center Network. [cited 23 Oct 2025]. Available: https://www.nmdp.org/what-we-do/partnerships/global-transplant-network.
  3. Gennery AR, Lankester A, Inborn Errors Working Party (IEWP) of the European Society for Blood and Marrow Transplantation (EBMT). Long term outcome and immune function after hematopoietic stem cell transplantation for primary immunodeficiency. Front Pediatr. 2019;7: 381. https://doi.org/10.3389/fped.2019.00381.

This page contains general medical and/or legal information that cannot be applied safely to any individual case. Medical and/or legal knowledge and practice can change rapidly. Therefore, this page should not be used as a substitute for professional medical and/or legal advice. Additionally, links to other resources and websites are shared for informational purposes only and should not be considered an endorsement by the Immune Deficiency Foundation.

Adapted from the IDF Patient & Family Handbook for Primary Immunodeficiency Diseases, Sixth Edition 
Copyright ©2019 by Immune Deficiency Foundation, USA